SRX102975
GSM822274: UT-A ChipSeq H1-hESC c-Myc

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
treatment
None
treatment description
No special treatment or protocol applies
antibody antibodydescription
Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-764
controlid
generic_male
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_generic_male
antibody
c-Myc
antibody antibodydescription
rabbit polyclonal to amino acids 1-262 of c-Myc human origin
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
controlid
generic_male
labversion
align_on_cluster_bwa.pl v 1
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM822274: UT-A_ChipSeq_H1-hESC_c-Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
29343462
Reads aligned (%)
30.5
Duplicates removed (%)
52.6
Number of peaks
733 (qval < 1E-05)

hg38

Number of total reads
29343462
Reads aligned (%)
31.1
Duplicates removed (%)
52.4
Number of peaks
893 (qval < 1E-05)

Base call quality data from DBCLS SRA