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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: P19
ATCC
MeSH
RIKEN BRC
SRX102949
GSM821509: Input-seq in P19.6 cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
P19
Tissue
Embryo
Disease
Teratocarcinoma; Embryonal Carcinoma
Attributes by original data submitter
Sample
source_name
Untreated P19.6 cells, input
cell line
P19.6
cell type
embryonal carcinoma cells
background strain
C3H/HeHa
treatment
none
ip antibody
none
Sequenced DNA Library
library_name
GSM821509: Input-seq in P19.6 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
27005072
Reads aligned (%)
92.0
Duplicates removed (%)
64.3
Number of peaks
508 (qval < 1E-05)
mm9
Number of total reads
27005072
Reads aligned (%)
91.8
Duplicates removed (%)
64.5
Number of peaks
578 (qval < 1E-05)
Base call quality data from
DBCLS SRA