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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Lymphoblastoid cell line
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1027619
ChIP-seq of Homo sapiens: H3K4me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines
Attributes by original data submitter
Sample
isolate
YRI population
age
NA
biomaterial_provider
Coriell
sex
pooled male and female
tissue
blood
cell_line
LCLs
Sequenced DNA Library
library_name
H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
804451442
Reads aligned (%)
98.0
Duplicates removed (%)
43.3
Number of peaks
115944 (qval < 1E-05)
hg19
Number of total reads
804451442
Reads aligned (%)
97.3
Duplicates removed (%)
44.1
Number of peaks
118575 (qval < 1E-05)
Base call quality data from
DBCLS SRA