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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
SRX1023382
GSM1680579: Input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
source_name
K14CreER SmoM2 cells
cell type
K14CreER SmoM2 cells
chip antibody
none (Input DNA)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using Millipore EZ-Magna ChIP kit. Between 5-10ng of qPCR verified ChIPed DNA or input DNA was processed with the TruSeq ChIP Sample Prep Kit (Illumina) according to manufacturer instruction.
Sequencing Platform
instrument_model
Illumina HiScanSQ
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
20306475
Reads aligned (%)
95.1
Duplicates removed (%)
66.3
Number of peaks
385 (qval < 1E-05)
mm9
Number of total reads
20306475
Reads aligned (%)
94.0
Duplicates removed (%)
66.2
Number of peaks
418 (qval < 1E-05)
Base call quality data from
DBCLS SRA