Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
K14CreER SmoM2 cells
cell type
K14CreER SmoM2 cells
chip antibody
none (Input DNA)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using Millipore EZ-Magna ChIP kit. Between 5-10ng of qPCR verified ChIPed DNA or input DNA was processed with the TruSeq ChIP Sample Prep Kit (Illumina) according to manufacturer instruction.

Sequencing Platform

instrument_model
Illumina HiScanSQ

mm10

Number of total reads
20306475
Reads aligned (%)
95.1
Duplicates removed (%)
66.3
Number of peaks
385 (qval < 1E-05)

mm9

Number of total reads
20306475
Reads aligned (%)
94.0
Duplicates removed (%)
66.2
Number of peaks
418 (qval < 1E-05)

Base call quality data from DBCLS SRA