SRX101822
GSM820436: MDA-231 shEZH2 HOTAIR even

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-231_shEZH2_HOTAIR
cell line
MDA-231
cell type
MDA-231 cell line overexpressing human HOTAIR with EZH2 knocked down
lincrna probes
HOTAIR

Sequenced DNA Library

library_name
GSM820436: MDA-231_shEZH2_HOTAIR_even
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10285873
Reads aligned (%)
80.3
Duplicates removed (%)
44.8
Number of peaks
29361 (qval < 1E-05)

hg19

Number of total reads
10285873
Reads aligned (%)
77.2
Duplicates removed (%)
46.6
Number of peaks
27939 (qval < 1E-05)

Base call quality data from DBCLS SRA