SRX101820
GSM820434: MDA-231 HOTAIR odd

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-231_HOTAIR
cell line
MDA-231
cell type
MDA-231 cell line overexpressing human HOTAIR
lincrna probes
HOTAIR

Sequenced DNA Library

library_name
GSM820434: MDA-231_HOTAIR_odd
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12011503
Reads aligned (%)
86.2
Duplicates removed (%)
29.8
Number of peaks
46753 (qval < 1E-05)

hg19

Number of total reads
12011503
Reads aligned (%)
85.8
Duplicates removed (%)
30.4
Number of peaks
46581 (qval < 1E-05)

Base call quality data from DBCLS SRA