Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-231_HOTAIR
cell line
MDA-231
cell type
MDA-231 cell line overexpressing human HOTAIR
lincrna probes
HOTAIR

Sequenced DNA Library

library_name
GSM820433: MDA-231_HOTAIR_even
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
13545775
Reads aligned (%)
83.3
Duplicates removed (%)
44.4
Number of peaks
35817 (qval < 1E-05)

hg19

Number of total reads
13545775
Reads aligned (%)
80.3
Duplicates removed (%)
46.1
Number of peaks
34085 (qval < 1E-05)

Base call quality data from DBCLS SRA