SRX101772
GSM820536: IgG IMR90 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
human IMR90 fibroblasts
cell line
IMR90
cell type
fetal lung fibroblast
antibody
IgG

Sequenced DNA Library

library_name
GSM820536: IgG_IMR90_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20341259
Reads aligned (%)
51.4
Duplicates removed (%)
27.3
Number of peaks
1421 (qval < 1E-05)

hg19

Number of total reads
20341259
Reads aligned (%)
51.3
Duplicates removed (%)
27.5
Number of peaks
1409 (qval < 1E-05)

Base call quality data from DBCLS SRA