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BigWig
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BigWig
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Peak-call (q < 1E-10)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX101693
GSM818945: Control IgG ChIP-Seq in early formed neurons
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
Neurons
cell type
ES-derived neurons
differentiation specificity
11 days in differentiation conditions with retinoic acid
chip antibody
IgG (Millipore)
Sequenced DNA Library
library_name
GSM818945: Control IgG ChIP-Seq in early formed neurons
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
2938956
Reads aligned (%)
91.9
Duplicates removed (%)
9.1
Number of peaks
170 (qval < 1E-05)
mm9
Number of total reads
2938956
Reads aligned (%)
91.7
Duplicates removed (%)
9.7
Number of peaks
172 (qval < 1E-05)
Base call quality data from
DBCLS SRA