Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neurons
cell type
ES-derived neurons
differentiation specificity
11 days in differentiation conditions with retinoic acid
chip antibody
IgG (Millipore)

Sequenced DNA Library

library_name
GSM818945: Control IgG ChIP-Seq in early formed neurons
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
2938956
Reads aligned (%)
91.9
Duplicates removed (%)
9.1
Number of peaks
170 (qval < 1E-05)

mm9

Number of total reads
2938956
Reads aligned (%)
91.7
Duplicates removed (%)
9.7
Number of peaks
172 (qval < 1E-05)

Base call quality data from DBCLS SRA