SRX1016682
chip-seq of individual exposed to low pm2.5 rep 2 (CHIP)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Polymorphonuclear leukocytes
NA
NA

Attributes by original data submitter

Sample

isolate
PM2.5_high_4
age
>21
biomaterial_provider
Wei Zhang
sex
not collected
tissue
polymorphonuclear leukocytes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30485788
Reads aligned (%)
49.7
Duplicates removed (%)
12.2
Number of peaks
7703 (qval < 1E-05)

hg19

Number of total reads
30485788
Reads aligned (%)
49.4
Duplicates removed (%)
12.6
Number of peaks
7625 (qval < 1E-05)

Base call quality data from DBCLS SRA