SRX1016679
chip-seq of individual exposed to high pm2.5 rep 1 (CHIP)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Polymorphonuclear leukocytes
NA
NA

Attributes by original data submitter

Sample

isolate
PM2.5_high_1
age
>18
biomaterial_provider
Wei Zhang
sex
not collected
tissue
polymorphonuclear leukocytes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24223516
Reads aligned (%)
42.3
Duplicates removed (%)
19.6
Number of peaks
6603 (qval < 1E-05)

hg19

Number of total reads
24223516
Reads aligned (%)
41.9
Duplicates removed (%)
19.9
Number of peaks
6473 (qval < 1E-05)

Base call quality data from DBCLS SRA