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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: su(Hw)
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX101476
GSM818842: Su(Hw) wild type - preimmune
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
su(Hw)
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
WT_PREIMM
strain
Canton S
tissue
ovary
developmental stage
less than 6 hour old virgin
antibody
anti-Su(Hw)
Sequenced DNA Library
library_name
GSM818842: Su(Hw) wild type - preimmune
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
34187983
Reads aligned (%)
59.0
Duplicates removed (%)
58.9
Number of peaks
2514 (qval < 1E-05)
dm3
Number of total reads
34187983
Reads aligned (%)
59.3
Duplicates removed (%)
54.3
Number of peaks
6301 (qval < 1E-05)
Base call quality data from
DBCLS SRA