Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NELFA

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell line
cell type
Hela cell line
treatment
doxycyclin EGF
antibody
IP with goat antibody sc-23599 (Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq: NEBNext ChIP-seq library kit (new England Biolabs)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
43133346
Reads aligned (%)
30.8
Duplicates removed (%)
67.9
Number of peaks
8218 (qval < 1E-05)

hg38

Number of total reads
43133346
Reads aligned (%)
32.2
Duplicates removed (%)
66.6
Number of peaks
8305 (qval < 1E-05)

Base call quality data from DBCLS SRA