Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Liver
Cell type
HuCCT1
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HuCCT1 human cell line
cell line
HuCCT1
sirna
YAP/TAZ
chip antibody
H3K4Me1 (Abcam, catalog# ab8895, lot# GR61306-1)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
40789305
Reads aligned (%)
93.0
Duplicates removed (%)
8.9
Number of peaks
32169 (qval < 1E-05)

hg19

Number of total reads
40789305
Reads aligned (%)
92.6
Duplicates removed (%)
9.6
Number of peaks
32035 (qval < 1E-05)

Base call quality data from DBCLS SRA