Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KAT7

Cell type

Cell type Class
Digestive tract
Cell type
RKO
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
RKO_HBO1_ChIPseq
cell line
RKO
cell type
human colon carcinoma
growth conditions
untreated cells, normal growth conditions
chip antibody
Anti-KAT7/Hbo1/ MYST2 antibody
chip antibody vendor
abcam

Sequenced DNA Library

library_name
GSM818282: HBO1_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
39682439
Reads aligned (%)
97.4
Duplicates removed (%)
3.5
Number of peaks
15464 (qval < 1E-05)

hg19

Number of total reads
39682439
Reads aligned (%)
96.6
Duplicates removed (%)
4.7
Number of peaks
15675 (qval < 1E-05)

Base call quality data from DBCLS SRA