Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Xenograft_MCF7_ER_Vehicle
implated cell line/type
MCF7; MCF7-Luc2/YFP cells
host strain
age-matched female NOD/SCID/IL2Rg-/- (NSG)
tissue
xenografts tumors in vivo
treatment groupd
Vehicle
chip antibody
ERa Antibody (HC-20)
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
16996031
Reads aligned (%)
81.0
Duplicates removed (%)
4.2
Number of peaks
785 (qval < 1E-05)

hg38

Number of total reads
16996031
Reads aligned (%)
83.0
Duplicates removed (%)
2.7
Number of peaks
620 (qval < 1E-05)

Base call quality data from DBCLS SRA