Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_PR_3hr_E2
cell line
MCF7
cell type
ER+ breast cancer cell line
condition
E2
chip antibody
PR Antibody (H-190)
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was end-repaired, A-tailed, ligated to the sequencing adapters, amplified by 18 cycles of PCR and size selected (200-300 bp) followed by single end 50bp sequencing on an Illumina HiSeq 2000 according to the manufacturer’s recommendations

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
34826944
Reads aligned (%)
89.7
Duplicates removed (%)
7.6
Number of peaks
1386 (qval < 1E-05)

hg38

Number of total reads
34826944
Reads aligned (%)
91.9
Duplicates removed (%)
6.0
Number of peaks
1261 (qval < 1E-05)

Base call quality data from DBCLS SRA