Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_p300_Full_Media_3hr
cell line
MCF7
cell type
ER+ breast cancer cell line
condition
Full_Media
chip antibody
p300 Antibody (C-20)
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was end-repaired, A-tailed, ligated to the sequencing adapters, amplified by 18 cycles of PCR and size selected (200-300 bp) followed by single end 50bp sequencing on an Illumina HiSeq 2000 according to the manufacturer’s recommendations

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
7725991
Reads aligned (%)
95.1
Duplicates removed (%)
1.8
Number of peaks
946 (qval < 1E-05)

hg38

Number of total reads
7725991
Reads aligned (%)
96.3
Duplicates removed (%)
1.2
Number of peaks
902 (qval < 1E-05)

Base call quality data from DBCLS SRA