Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TET2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Day 12 differentiated cells
cell type
Day 12 differentiated cells (NPCs)
chip antibody
anti-TET2 (Abiocode, R-1086)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with AF9 or TET2 antibodies. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
21208003
Reads aligned (%)
58.2
Duplicates removed (%)
40.0
Number of peaks
847 (qval < 1E-05)

hg38

Number of total reads
21208003
Reads aligned (%)
60.4
Duplicates removed (%)
38.3
Number of peaks
707 (qval < 1E-05)

Base call quality data from DBCLS SRA