SRX101131
GSM817348: R1881(-)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Hormone refractory prostate cancer cells
cells
VCaP
treatment
Vehicle (0.1% DMSO)
chip antibody
AR

Sequenced DNA Library

library_name
GSM817348: R1881(-)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46049087
Reads aligned (%)
88.6
Duplicates removed (%)
14.2
Number of peaks
19665 (qval < 1E-05)

hg19

Number of total reads
46049087
Reads aligned (%)
87.8
Duplicates removed (%)
15.2
Number of peaks
19655 (qval < 1E-05)

Base call quality data from DBCLS SRA