Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

Kidney Pelvis

MeSH Description

The flattened, funnel-shaped expansion connecting the URETER to the KIDNEY CALICES.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Renal Pelvis

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H-24259

DONOR_AGE

day 97

DONOR_HEALTH_STATUS

NA

DONOR_SEX

male

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0001224

Sequenced DNA Library

library_name

DS19386

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

40638852

Reads aligned (%)

81.3

Duplicates removed (%)

9.1

Number of peaks

57295 (qval < 1E-05)

hg19

Number of total reads

40638852

Reads aligned (%)

80.8

Duplicates removed (%)

10.2

Number of peaks

59150 (qval < 1E-05)