Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

Kidney Cortex

MeSH Description

The outer zone of the KIDNEY, beneath the capsule, consisting of KIDNEY GLOMERULUS; KIDNEY TUBULES, DISTAL; and KIDNEY TUBULES, PROXIMAL.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Renal Cortex, Right

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H-24169

DONOR_AGE

day 120

DONOR_HEALTH_STATUS

NA

DONOR_SEX

male

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0001225

Sequenced DNA Library

library_name

DS18928

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

35711893

Reads aligned (%)

91.4

Duplicates removed (%)

6.8

Number of peaks

45498 (qval < 1E-05)

hg19

Number of total reads

35711893

Reads aligned (%)

90.9

Duplicates removed (%)

7.8

Number of peaks

44991 (qval < 1E-05)