Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Kidney Cortex
MeSH Description
The outer zone of the KIDNEY, beneath the capsule, consisting of KIDNEY GLOMERULUS; KIDNEY TUBULES, DISTAL; and KIDNEY TUBULES, PROXIMAL.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Renal Cortex, Left
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24111
DONOR_AGE
day 105
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0001225

Sequenced DNA Library

library_name
DS18542
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
44581098
Reads aligned (%)
98.5
Duplicates removed (%)
6.3
Number of peaks
48239 (qval < 1E-05)

hg19

Number of total reads
44581098
Reads aligned (%)
97.9
Duplicates removed (%)
7.7
Number of peaks
47760 (qval < 1E-05)

Base call quality data from DBCLS SRA