Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF7L2

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MCF-7
cell organism
human
cell description
mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
TCF7L2
antibody antibodydescription
Rabbit monoclonal. Antibody Target: TCF7L2
antibody targetdescription
TCF4
antibody vendorname
Cell Signaling Technology
antibody vendorid
2569
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH000762
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM816438: USC_ChipSeq_MCF-7_TCF4_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
54851558
Reads aligned (%)
95.0
Duplicates removed (%)
7.4
Number of peaks
10980 (qval < 1E-05)

hg19

Number of total reads
54851558
Reads aligned (%)
94.2
Duplicates removed (%)
8.6
Number of peaks
10964 (qval < 1E-05)

Base call quality data from DBCLS SRA