Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF7L2

Cell type

Cell type Class
Pancreas
Cell type
PANC-1
Tissue
Pancreas/Duct
Disease
Epithelioid Carcinoma

Attributes by original data submitter

Sample

source_name
PANC-1
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
PANC-1
cell organism
human
cell description
pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
TCF7L2
antibody antibodydescription
Rabbit monoclonal. Antibody Target: TCF7L2
antibody targetdescription
TCF4
antibody vendorname
Cell Signaling Technology
antibody vendorid
2569
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH002070
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM816437: USC_ChipSeq_PANC-1_TCF4_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
41422677
Reads aligned (%)
82.0
Duplicates removed (%)
11.7
Number of peaks
11404 (qval < 1E-05)

hg38

Number of total reads
41422677
Reads aligned (%)
84.3
Duplicates removed (%)
10.0
Number of peaks
11380 (qval < 1E-05)

Base call quality data from DBCLS SRA