Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Bone

Cell type

Osteobl

Tissue

bone

Lineage

mesoderm

Description

osteoblasts (NHOst)

Sample

source_name

Osteobl

biomaterial_provider

Lonza

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell description

osteoblasts (NHOst)

controlid

generic_female

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

replicate

1,3,2

cell description

normal human osteoblasts (NHOst)

cell karyotype

normal

cell lineage

mesoderm

cell sex

U

controlid

generic_female

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM816654: Duke_DnaseSeq_Osteobl

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

260345816

Reads aligned (%)

39.6

Duplicates removed (%)

66.0

Number of peaks

33201 (qval < 1E-05)

hg19

Number of total reads

260345816

Reads aligned (%)

39.5

Duplicates removed (%)

66.9

Number of peaks

32214 (qval < 1E-05)