Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

GM19240

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM19240

biomaterial_provider

Coriell

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

controlid

generic_female

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

replicate

1,2

cell description

B-Lymphocyte, Lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, Treatment: Epstein-Barr Virus transformed

cell karyotype

unknown

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

controlid

generic_female

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM816648: Duke_DnaseSeq_GM19240

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

88678656

Reads aligned (%)

98.5

Duplicates removed (%)

35.5

Number of peaks

0 (qval < 1E-05)

hg19

Number of total reads

88678656

Reads aligned (%)

98.1

Duplicates removed (%)

36.7

Number of peaks

32902 (qval < 1E-05)