Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

HUVEC

Primary Tissue

Umbilical Cord

Tissue Diagnosis

Normal

Sample

source_name

HUVEC

biomaterial_provider

Lonza

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

controlid

HUVEC/Input

labversion

baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_HUVEC

replicate

1,2

cell organism

human

cell description

umbilical vein endothelial cells

cell karyotype

normal

cell lineage

mesoderm

cell sex

U

treatment

None

treatment description

No special treatment or protocol applies

controlid

HUVEC/Input

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM816646: Duke_DnaseSeq_HUVEC

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

40580317

Reads aligned (%)

96.2

Duplicates removed (%)

10.3

Number of peaks

22674 (qval < 1E-05)

hg19

Number of total reads

40580317

Reads aligned (%)

96.1

Duplicates removed (%)

10.9

Number of peaks

28439 (qval < 1E-05)