Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Chorion

Tissue

fetal membrane

Lineage

extraembryonic mesoderm, trophectoderm

Description

chorion cells (outermost of two fetal membranes), fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes.

Sample

source_name

Chorion

biomaterial_provider

Dr. Amy Murtha at Duke University

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

controlid

generic_female

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

replicate

1,2

cell organism

human

cell description

chorion cells (outermost of two fetal membranes), fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes.

cell karyotype

unknown

cell lineage

extraembryonic mesoderm, trophectoderm

cell sex

U

treatment

None

treatment description

No special treatment or protocol applies

controlid

generic_female

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM816628: Duke_DnaseSeq_Chorion

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

140720347

Reads aligned (%)

96.6

Duplicates removed (%)

40.4

Number of peaks

40038 (qval < 1E-05)

hg19

Number of total reads

140720347

Reads aligned (%)

96.4

Duplicates removed (%)

41.1

Number of peaks

40160 (qval < 1E-05)