Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Mouse monoclonal IgG. Antibody Target: GATA2
antibody targetdescription
This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded program plays an essential role in regulation transcription of genes involved in the development and proliferation of hematopoietic and endocrine cell lineages (RefSeq).
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-267
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL1430,SL1665
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Mouse monoclonal IgG.
antibody targetdescription
This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded program plays an essential role in regulation transcription of genes involved in the development and proliferation of hematopoietic and endocrine cell lineages (RefSeq).
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-267
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL2455
labexpid
SL1430
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803540: HudsonAlpha_ChipSeq_K562_GATA2_(SC-267)_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
64557588
Reads aligned (%)
73.7
Duplicates removed (%)
16.4
Number of peaks
23553 (qval < 1E-05)

hg38

Number of total reads
64557588
Reads aligned (%)
74.7
Duplicates removed (%)
15.6
Number of peaks
23572 (qval < 1E-05)

Base call quality data from DBCLS SRA