Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BATF

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Mouse monoclonal. Raised against recombinant B-ATF of human origin. Recommended for detection of B-ATF of m, r and h origin by WB, IP and ELISA. Antibody Target: BATF
antibody targetdescription
The protein encoded by this gene is a nuclear basic leucine zipper protein that belongs to the AP-1/ATF superfamily of transcription factors. The leucine zipper of this protein mediates dimerization with members of the Jun family of proteins. This protein is thought to be a negative regulator of AP-1/ATF transcriptional events.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-100974
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL516,SL517
labexpid
SL985,SL839
labversion
8,7
replicate
1,2
softwareversion
MACS
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-100974
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL516
labexpid
SL839
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803538: HudsonAlpha_ChipSeq_GM12878_BATF_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
51916186
Reads aligned (%)
68.4
Duplicates removed (%)
7.9
Number of peaks
45247 (qval < 1E-05)

hg38

Number of total reads
51916186
Reads aligned (%)
69.9
Duplicates removed (%)
7.2
Number of peaks
43802 (qval < 1E-05)

Base call quality data from DBCLS SRA