Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Blood
Cell type
GM12891
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM12891
biomaterial_provider
Coriell
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription
YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-281
controlid
SL1782
labexpid
SL2388,SL2130
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin
antibody targetdescription
YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-281
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1782
labexpid
SL2388
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803535: HudsonAlpha_ChipSeq_GM12891_YY1_(SC-281)_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
53761898
Reads aligned (%)
63.5
Duplicates removed (%)
16.9
Number of peaks
22155 (qval < 1E-05)

hg38

Number of total reads
53761898
Reads aligned (%)
64.6
Duplicates removed (%)
21.5
Number of peaks
21460 (qval < 1E-05)

Base call quality data from DBCLS SRA