Antigen

Antigen Class

TFs and others

Antigen

PBX3

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit Polyclonal IgG. Antibody Target: PBX3

antibody targetdescription

Pbx 3 (D-17)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-891

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL678,SL516

labexpid

SL615,SL647

labversion

SL615,SL647

replicate

1,2

softwareversion

MACS

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-891

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL516

labexpid

SL615

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803532: HudsonAlpha_ChipSeq_GM12878_Pbx3_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

58367803

Reads aligned (%)

74.0

Duplicates removed (%)

14.8

Number of peaks

17589 (qval < 1E-05)

hg19

Number of total reads

58367803

Reads aligned (%)

72.6

Duplicates removed (%)

15.1

Number of peaks

18112 (qval < 1E-05)