Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PBX3

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Rabbit Polyclonal IgG. Antibody Target: PBX3
antibody targetdescription
Pbx 3 (D-17)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-891
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL678,SL516
labexpid
SL615,SL647
labversion
SL615,SL647
replicate
1,2
softwareversion
MACS
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-891
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL516
labexpid
SL615
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803532: HudsonAlpha_ChipSeq_GM12878_Pbx3_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
58367803
Reads aligned (%)
61.6
Duplicates removed (%)
15.1
Number of peaks
18112 (qval < 1E-05)

hg38

Number of total reads
58367803
Reads aligned (%)
63.1
Duplicates removed (%)
14.8
Number of peaks
17589 (qval < 1E-05)

Base call quality data from DBCLS SRA