Antigen

Antigen Class

TFs and others

Antigen

SPI1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit Polyclonal IgG. Antibody Target: PU1

antibody targetdescription

PU.1 (H-135)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-22805

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL1394,SL516

labexpid

SL612,SL963,SL649

labversion

SL649

replicate

1,3,2

softwareversion

MACS

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-22805

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL516

labexpid

SL612

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803531: HudsonAlpha_ChipSeq_GM12878_PU.1_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

210191297

Reads aligned (%)

40.5

Duplicates removed (%)

40.4

Number of peaks

58504 (qval < 1E-05)

hg19

Number of total reads

210191297

Reads aligned (%)

40.0

Duplicates removed (%)

41.4

Number of peaks

60982 (qval < 1E-05)