Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUND

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal IgG. Antibody Target: JunD
antibody targetdescription
The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-74
controlid
SL1398
labexpid
SL2690,SL3065
replicate
1,2
softwareversion
MACS
antibody
JunD
antibody antibodydescription
rabbit polyclonal IgG
antibody targetdescription
The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-74
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1398
labexpid
SL2690
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803529: HudsonAlpha_ChipSeq_H1-hESC_JunD_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
111459230
Reads aligned (%)
43.7
Duplicates removed (%)
39.8
Number of peaks
21556 (qval < 1E-05)

hg38

Number of total reads
111459230
Reads aligned (%)
44.7
Duplicates removed (%)
38.7
Number of peaks
22212 (qval < 1E-05)

Base call quality data from DBCLS SRA