SRX100569
GSM803524: HudsonAlpha ChipSeq K562 GABP v041610.1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GABPA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP
antibody targetdescription
The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-28312
controlid
SL2455
labexpid
SL3356,SL2943
replicate
1,2
cell sex
F
antibody
GABP
antibody antibodydescription
Mouse monoclonal, GABPa(G-1), IgG1
antibody targetdescription
The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-28312
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL2943
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803524: HudsonAlpha_ChipSeq_K562_GABP_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44306491
Reads aligned (%)
80.3
Duplicates removed (%)
43.1
Number of peaks
17563 (qval < 1E-05)

hg19

Number of total reads
44306491
Reads aligned (%)
80.1
Duplicates removed (%)
43.3
Number of peaks
17526 (qval < 1E-05)

Base call quality data from DBCLS SRA