Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Blood
Cell type
GM12892
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM12892
biomaterial_provider
Coriell
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed
antibody antibodydescription
Rabbit polyclonal. Antibody Target: YY1
antibody targetdescription
YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-1703
controlid
SL1783
labexpid
SL3584,SL2132
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Rabbit polyclonal
antibody targetdescription
YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-1703
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1783
labexpid
SL2132
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803516: HudsonAlpha_ChipSeq_GM12892_YY1_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
55132310
Reads aligned (%)
74.3
Duplicates removed (%)
14.8
Number of peaks
28555 (qval < 1E-05)

hg38

Number of total reads
55132310
Reads aligned (%)
75.7
Duplicates removed (%)
15.6
Number of peaks
27226 (qval < 1E-05)

Base call quality data from DBCLS SRA