Antigen

Antigen Class

TFs and others

Antigen

MEF2A

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin. Antibody Target: MEF2A

antibody targetdescription

The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-313

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL1613

labexpid

SL1425,SL1792

replicate

1,2

softwareversion

MACS

antibody targetdescription

The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-313

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL1613

labexpid

SL1425

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803511: HudsonAlpha_ChipSeq_GM12878_MEF2A_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

45362481

Reads aligned (%)

84.6

Duplicates removed (%)

33.8

Number of peaks

25362 (qval < 1E-05)

hg19

Number of total reads

45362481

Reads aligned (%)

82.5

Duplicates removed (%)

33.6

Number of peaks

26097 (qval < 1E-05)