Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ETS1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: ETS1
antibody targetdescription
ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-350
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL1613
labexpid
SL1655,SL1507
replicate
1,2
antibody antibodydescription
Rabbit polyclonal IgG
antibody targetdescription
ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-350
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL1613
labexpid
SL1507
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803510: HudsonAlpha_ChipSeq_GM12878_ETS1_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
53867625
Reads aligned (%)
62.1
Duplicates removed (%)
21.7
Number of peaks
13093 (qval < 1E-05)

hg38

Number of total reads
53867625
Reads aligned (%)
63.4
Duplicates removed (%)
21.3
Number of peaks
12794 (qval < 1E-05)

Base call quality data from DBCLS SRA