Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3
antibody targetdescription
Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-188
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL1613
labexpid
SL1508,SL1269
replicate
1,2
softwareversion
MACS
antibody targetdescription
Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-188
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL1613
labexpid
SL1269
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803508: HudsonAlpha_ChipSeq_GM12878_ATF3_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
36932642
Reads aligned (%)
65.3
Duplicates removed (%)
18.8
Number of peaks
4431 (qval < 1E-05)

hg38

Number of total reads
36932642
Reads aligned (%)
66.7
Duplicates removed (%)
18.5
Number of peaks
4168 (qval < 1E-05)

Base call quality data from DBCLS SRA