Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUND

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
antibody antibodydescription
rabbit polyclonal IgG. Antibody Target: JunD
antibody targetdescription
The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-74
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL593
labexpid
SL635,SL629
labversion
SL635,SL629
replicate
1,2
softwareversion
MACS
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-74
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL593
labexpid
SL635
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803500: HudsonAlpha_ChipSeq_HepG2_JunD_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
66000306
Reads aligned (%)
65.7
Duplicates removed (%)
8.2
Number of peaks
36837 (qval < 1E-05)

hg38

Number of total reads
66000306
Reads aligned (%)
66.7
Duplicates removed (%)
7.3
Number of peaks
36810 (qval < 1E-05)

Base call quality data from DBCLS SRA