Antigen

Antigen Class

TFs and others

Antigen

ELF1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin. Antibody Target: ELF1

antibody targetdescription

This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-631

controlid

SL1613

labexpid

SL2253,SL3352

replicate

1,2

softwareversion

MACS

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin.

antibody targetdescription

This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-631

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.1

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

controlid

SL1613

labexpid

SL2253

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803496: HudsonAlpha_ChipSeq_GM12878_ELF1_(SC-631)_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

63390010

Reads aligned (%)

76.7

Duplicates removed (%)

28.6

Number of peaks

29695 (qval < 1E-05)

hg38

Number of total reads

63390010

Reads aligned (%)

78.5

Duplicates removed (%)

29.0

Number of peaks

28839 (qval < 1E-05)