Antigen

Antigen Class

TFs and others

Antigen

EP300

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

source_name

SK-N-SH_RA

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

antibody antibodydescription

Rabbit Polyclonal. Antibody Target: P300

antibody targetdescription

EP300(c-20)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-585

controlid

SL2905

labexpid

SL2918,SL2910

replicate

1,2

softwareversion

MACS

antibody antibodydescription

Rabbit Polyclonal

antibody targetdescription

EP300(c-20)

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-585

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.2

protocol description

2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

controlid

SL2905

labexpid

SL2910

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803495: HudsonAlpha_ChipSeq_SK-N-SH_RA_p300_v041610.2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

48740291

Reads aligned (%)

85.1

Duplicates removed (%)

19.2

Number of peaks

80819 (qval < 1E-05)

hg19

Number of total reads

48740291

Reads aligned (%)

84.5

Duplicates removed (%)

20.2

Number of peaks

80683 (qval < 1E-05)