Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ELF1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin. Antibody Target: ELF1
antibody targetdescription
This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-631
controlid
SL1396
labexpid
SL2950,SL3360
replicate
1,2
softwareversion
MACS
antibody
ELF1_(SC-631)
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin.
antibody targetdescription
This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-631
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1396
labexpid
SL2950
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803494: HudsonAlpha_ChipSeq_K562_ELF1_(SC-631)_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
51917455
Reads aligned (%)
61.7
Duplicates removed (%)
25.3
Number of peaks
37097 (qval < 1E-05)

hg38

Number of total reads
51917455
Reads aligned (%)
62.6
Duplicates removed (%)
24.6
Number of peaks
36446 (qval < 1E-05)

Base call quality data from DBCLS SRA