Antigen

Antigen Class

TFs and others

Antigen

TAF1

Cell type

Cell type Class

Blood

Cell type

GM12892

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12892

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

antibody antibodydescription

Mouse monoclonal (p250). Antibody Target: TAF1

antibody targetdescription

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-735

controlid

SL818

labexpid

SL736,SL945

replicate

1,2

antibody

TAF1

antibody antibodydescription

Mouse monoclonal (p250)

antibody targetdescription

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-735

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.2

protocol description

2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

controlid

SL818

labexpid

SL736

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803489: HudsonAlpha_ChipSeq_GM12892_TAF1_v041610.2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

61329129

Reads aligned (%)

66.6

Duplicates removed (%)

7.7

Number of peaks

10580 (qval < 1E-05)

hg19

Number of total reads

61329129

Reads aligned (%)

64.9

Duplicates removed (%)

8.3

Number of peaks

11072 (qval < 1E-05)