Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
GM12892
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM12892
biomaterial_provider
Coriell
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed
controlid
SL1783
labexpid
SL1783
cell organism
human
cell description
B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, Treatment: Epstein-Barr Virus transformed
cell karyotype
unknown
cell lineage
mesoderm
cell sex
F
antibody
RevXlinkChromatin
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1783
labexpid
SL1783
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803482: HudsonAlpha_ChipSeq_GM12892_RevXlinkChromatin_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
61969794
Reads aligned (%)
89.0
Duplicates removed (%)
21.6
Number of peaks
487 (qval < 1E-05)

hg19

Number of total reads
61969794
Reads aligned (%)
85.3
Duplicates removed (%)
19.7
Number of peaks
914 (qval < 1E-05)

Base call quality data from DBCLS SRA