Antigen

Antigen Class

TFs and others

Antigen

FOXP2

Cell type

Cell type Class

Neural

Cell type

PFSK-1

Primary Tissue

Brain

Tissue Diagnosis

Medulloblastoma

Sample

source_name

PFSK-1

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

neuroectodermal cell line derived from a cerebral brain tumor, (PMID: 1316433)

antibody antibodydescription

Rabbit polyclonal, raised against C-terminal 127 amino acids of FOXP2 of human origin. Antibody Target: FOXP2

antibody targetdescription

This gene encodes a member of the forkhead/winged-helix (FOX) family of transcription factors. Transcriptional repressor, involved in the development of speech

antibody vendorname

abcam

antibody vendorid

ab16046

protocol description

a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

controlid

SL16

labexpid

SL14,SL13

replicate

1,2

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

transcriptional repressor, involved in development of speech

antibody vendorname

Abcam

antibody vendorid

ab16046

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR2x

protocol description

2-cycles of PCR (Myers)

controlid

SL16

labexpid

SL13

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803480: HudsonAlpha_ChipSeq_PFSK-1_FOXP2_PCR2x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

6477034

Reads aligned (%)

88.3

Duplicates removed (%)

3.3

Number of peaks

10497 (qval < 1E-05)

hg19

Number of total reads

6477034

Reads aligned (%)

88.0

Duplicates removed (%)

3.3

Number of peaks

10492 (qval < 1E-05)