Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZBTB7A

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Goat polyclonal IgG, epitope mapping at the C-terminus of LRF of human origin. Antibody Target: ZBTB7A
antibody targetdescription
Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity).
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-34508
controlid
SL2455
labexpid
SL2265,SL3183
replicate
1,2
softwareversion
MACS
antibody
ZBTB7A_(SC-34508)
antibody antibodydescription
Goat polyclonal IgG, epitope mapping at the C-terminus of LRF of human origin.
antibody targetdescription
Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity).
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-34508
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL2265
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803473: HudsonAlpha_ChipSeq_K562_ZBTB7A_(SC-34508)_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
59310380
Reads aligned (%)
65.3
Duplicates removed (%)
20.6
Number of peaks
35492 (qval < 1E-05)

hg38

Number of total reads
59310380
Reads aligned (%)
65.8
Duplicates removed (%)
20.3
Number of peaks
35520 (qval < 1E-05)

Base call quality data from DBCLS SRA