Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
SL3980,SL2455
labexpid
SL3980,SL2455
replicate
1,2
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
RevXlinkChromatin
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL2455
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803468: HudsonAlpha_ChipSeq_K562_RevXlinkChromatin_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
37443054
Reads aligned (%)
93.1
Duplicates removed (%)
10.7
Number of peaks
245 (qval < 1E-05)

hg19

Number of total reads
37443054
Reads aligned (%)
92.7
Duplicates removed (%)
11.1
Number of peaks
531 (qval < 1E-05)

Base call quality data from DBCLS SRA