SRX100511
GSM803466: HudsonAlpha ChipSeq H1-hESC Rad21 v041610.2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: RAD21
antibody targetdescription
Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname
abcam
antibody vendorid
ab992
controlid
SL1398
labexpid
SL3066,SL2689
replicate
1,2
softwareversion
MACS
antibody
Rad21
antibody antibodydescription
Rabbit polyclonal
antibody targetdescription
Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname
Abcam
antibody vendorid
ab992
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1398
labexpid
SL2689
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803466: HudsonAlpha_ChipSeq_H1-hESC_Rad21_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
109287919
Reads aligned (%)
48.6
Duplicates removed (%)
37.1
Number of peaks
107272 (qval < 1E-05)

hg38

Number of total reads
109287919
Reads aligned (%)
49.5
Duplicates removed (%)
36.2
Number of peaks
107760 (qval < 1E-05)

Base call quality data from DBCLS SRA